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Saturday, November 5, 2011
| Time | Event | |
| 14:00 - 14:15 | Opening Session (Lectures) - Jeff Cole & Gérald Grégori | |
| 14:15 - 16:10 | Biotechnology (Lectures) - Gerhard Nebe-von-Caron | |
| 14:15 - 14:50 | › Multi-parameter flow cytometry as a tool to monitor microbial oil production towards biofuel - Invited Speaker : Teresa Lopes da Silva, National Laboratory of Energy and Geology - Bioenergy Unity | |
| 14:50 - 15:10 | › Monitoring microbial population dynamics in a labscale biogas reactor using flow cytometry - Christin Koch, Helmholtz Centre for Environmental Research | |
| 15:10 - 15:30 | › Biosensor based analysis of microbial production strains - Frunzke Julia, Institute of Bio- and Geosciences, IBG1: Biotechnology | |
| 15:30 - 15:50 | › Single cell-scale metabolite sensor-based system for rapid isolation of bacterial metabolite producers - Eggeling Lothar, Research Centre Jülich GmbH, IBG-1: Systems Microbiology | |
| 15:50 - 16:10 | › The Mechanism of Hydrocarbon Uptake by Pseudomonas fluorescens in Lubricating Oil Biodegradation - Ni'matuzahroh Ni'matuzahroh, Microbiology Laboratory, Biology Department, Science and Technology Faculty, Airlangga University, Indonesia | |
| 16:10 - 16:40 | Coffee break (Lectures) | |
| 16:40 - 18:00 | Biotechnology (Lectures) - Gerhard Nebe-von-Caron | |
| 16:40 - 17:00 | › Changes in viability and physiology of starter culture Lactococcus lactis subsp. cremoris AM2 during Cheddar cheese manufacture as monitored by flow cytometry and cell sorting. - Imelda Doolan, University of Limerick | |
| 17:00 - 17:20 | › The application of flow cytometry towards understanding the effects of processing treatments on food borne pathogens - Deirdre Kennedy, University of Limerick | |
| 17:20 - 17:40 | › Phenotypic characterization of Aspergillus niger strains in submerged cultivation and at the single cell level. - Mhairi McIntyre Workman, Center for Microbial Biotechnology | |
| 17:40 - 18:00 | › Omega-3 fatty acids act on Bifidobacterium animalis subsp. lactis survival during storage of organic fermented milks - Ana Carolina FLORENCE, AgroParisTech - INRA CBAI LGMPA, FCF - USP - Faculdade de Ciencias Farmacêuticas | |
| 18:00 - 18:30 | Refreshment / Demos / Posters (Posters) | |
| 18:30 - 19:30 | Round table - Single cell analysis : State of the Art and New Trends (Lectures) | |
| 19:30 - 21:00 | Dinner | |
| 21:00 - 22:00 | Demos / Posters - Presentation of the Posters - Demos of the Instruments |
Sunday, November 6, 2011
| Time | Event | |
| 07:30 - 08:30 | Breakfast | |
| 08:30 - 09:45 | Cell Biology (Lectures) - Kenji Yasuda | |
| 08:30 - 09:05 | › Algebraic and geometric understanding of cells, epigenetic inheritance of phenotypes between generations using on-chip single cell cultivation system - Invited Speaker : Kenji Yasuda, Institute of Biomaterials and Bioengineering, Tokyo Medical and Dental University | |
| 09:05 - 09:25 | › Bacterial persistence based on epigenetically correlated stochastic gene expression - Wakamoto Yuichi, Research Center for Complex Systems Biology | |
| 09:25 - 09:45 | › Single-growing units phenotypic heterogeneity in Streptococcus thermophilus DSM20617 - Mora Diego, Dipartimento di Scienze e Tecnologie Alimentari e Microbiologiche | |
| 09:45 - 10:15 | Coffee break | |
| 10:15 - 11:30 | From data analysis to mathematical modelling (Lectures) - Hazel Davey | |
| 10:15 - 10:50 | › Flow cytometry data analysis using Bioconductor. - Invited Speaker : Nolwenn Le Meur, Ecole des Hautes Etudes en Santé Publique | |
| 10:50 - 11:10 | › Flow, Nets and GPs - Hazel Davey, Institute of Biological, Environmental and Rural Sciences | |
| 11:10 - 11:30 | › Functional Data Analysis and Classification of Phytoplankton Based on Autonomous Flow Cytometer Data - Malkassian Anthony, Laboratoire de Microbiologie, de Géochimie et d'Ecologie Marines | |
| 11:30 - 13:30 | Lunch | |
| 13:30 - 15:05 | Single cell approaches to cytomics, transcriptomics and proteomics - Susann Müller | |
| 13:30 - 14:05 | › Bridging the Gap - Cytomics meets Proteomics - Invited Speaker : Frank Schmidt, Ernst-Moritz-Arndt-University of Greifswald - Interfaculty Institute for Genetics and Functional Genomics | |
| 14:05 - 14:25 | › FUNCTIONAL SINGLE CELL ANALYTICS – STUDYING DNA PATTERNS AND DYNAMICS OF POLYPHOSPHATE ACCUMULATING BACTERIA IN WASTE WATER COMMUNITIES - Susanne Gunther, Department of Environmental Microbiology - Susann Müller, Department of Environmental Microbiology | |
| 14:25 - 14:45 | › Flow cytometric monitoring of a three-species mixed bacterial community relevant for Cystic Fibrosis - Rüger Marc, Otto von Guericke University, Bioprocess Engineering, Magdeburg, Germany | |
| 14:45 - 15:05 | › Physical interactions between Desulfovibrio vulgaris Hildenborough and Clostridium acetobutylicum are required to induce metabolic changes in the consortia - Marie Thérèse Giudici-Orticoni, Bioenergetic and protein engineering laboratory | |
| 15:05 - 16:20 | Human Health (Lectures) - Roy Bongaerts | |
| 15:05 - 15:40 | › No more plating? Fast methods for microbial parameters and for screening of pathogens in drinking water analysis using flow cytometry - Invited Speaker : Thomas Egli, Swiss Federal Institute of Aquatic Science and Technology | |
| 15:40 - 16:00 | › Identification of Klebsiella pneumoniae's strains isolated from « urine » as a human pathological product and evaluation of their antibiotic resistance. - karima BENSALEM, Laboratory of Biofilms and Biocontaminations of Materials | |
| 16:00 - 16:20 | › Use of flow cytometry and FACS to isolate antibiotic resistant Salmonella enterica sv. Typhimurium following exposure to biocides - Tim Overton, Bioengineering, School of Chemical Engineering, University of Birmingham | |
| 16:20 - 17:00 | Coffee break (Lectures) | |
| 17:00 - 17:20 | Presentation PARTEC - Presentation by PARTEC | |
| 17:20 - 17:40 | Presentation ACCURI-BD - Presentation by ACCURI-BD | |
| 17:40 - 18:00 | Presentation CYTOBUOY - Presentation by CYTOBUOY | |
| 18:00 - 18:20 | Presentation APOGEE - Presentation by APOGEE | |
| 18:20 - 18:40 | Presentation QIOPtics - Presentation by QIOPtics | |
| 18:40 - 19:30 | Refreshment / Demos / Posters (Posters) | |
| 19:30 - 21:00 | Dinner | |
| 21:00 - 22:00 | Demos / Posters - Presentation of the Posters - Demos of the Instruments |
Monday, November 7, 2011
| Time | Event | |
| 07:30 - 08:30 | Breakfast | |
| 08:30 - 09:45 | Natural Environment (Lectures) - Gérald Grégori | |
| 08:30 - 09:05 | › Microautoradiography combined to fluorescence in situ hybridization as a way to interrogate single cells about their phylogeny and activity: a review of its use in marine microbial ecology, of its advantages and limitations, and some forecast - Invited Speaker : Josep M Gasol, Institut de Ciències del Mar | |
| 09:05 - 09:25 | › High-throughput analysis of soil eukaryotic unicellular microorganisms: from cytometry to pyrosequencing - Guillaume Lentendu, Helmholtz Centre for Environmental Research, Molecular Evolution & Animal Systematics, University of Leipzig, Plant Physiology, University of Leipzig | |
| 09:25 - 09:45 | › Calculating the carbon content of a drop in the ocean: alternatives to chlorophyll a in phytoplankton biomass estimation. - Katy R. Owen, Laboratory for Global Marine and Atmospheric Chemistry, Centre for Environment, Fisheries and Aquaculture Science | |
| 09:45 - 10:15 | Coffee break | |
| 10:15 - 11:35 | Natural Environment (Lectures) - Gérald Grégori | |
| 10:15 - 10:35 | › Differential growth and mortality rates of Prochlorococcus, Synechococcus and picoeukaryotes across subarctic and subtropical waters - Francois Ribalet, School of Oceanography, University of Washington | |
| 10:35 - 10:55 | › Phytoplankton monitoring: pulse shape recording flow cytometry for an in situ high resolution observing approach - Melilotus Thyssen, Laboratoire d'Océanologie et de Géosciences (LOG, Wimereux) | |
| 10:55 - 11:15 | › Phytoplankton dynamics in the temperate coastal waters assessed by flow cytometry: the DYMAPHY project - Luis Felipe Artigas, Laboratoire d'Océanologie et Géosciences - Université du Littoral Côte d'Opale | |
| 11:15 - 11:35 | › Light dependence of phosphorus uptake by microorganisms in the North and South Pacific subtropical gyres - Solange Duhamel, University of Hawaii - Center for Microbial Oceanography: Research and Education | |
| 11:35 - 13:30 | Lunch | |
| 13:30 - 16:05 | New instrumental developments and techniques (Lectures) - J. Paul Robinson | |
| 13:30 - 14:05 | › High-throughput multiparametric flow cytometry – how does the new hardware impact our interaction with data? - Invited Speaker : Bartek Rajwa, Bindley Bioscience Center, Purdue University | |
| 14:05 - 14:25 | › SeaFlow: A novel underway cytometer for continuous observations of phytoplankton in the ocean - Jarred Swalwell, School of Oceanography, University of Washington | |
| 14:25 - 14:45 | › FluidFM: A novel nanofluidics instrument for single cell applications - Julia A. Vorholt, Institute of Microbiology and Institute of Biomechanical Engineering | |
| 14:45 - 15:05 | › Rapid Biomarker Profiling Of Escherichia coli Utilising MALDI-TOF Mass Spectrometry and a Multivariate Pattern Recognition Approach - Remi Momo, School of Chemical Engineering and Advanced Materials | |
| 15:05 - 15:25 | › A microfluidic cytometer exploiting a spatially modulated fluorescence signal to simultaneously measure fluorescent intensity and size on a single cell level - Sommer Christian, Institut für Mikrotechnik Mainz - Baßler Michael, Institut für Mikrotechnik Mainz | |
| 15:25 - 15:45 | › Hyperspectral Cytometry at the Single-Cell Level Using a 32-Channel Photodetector : preliminary results on bacteria - Gérald Grégori, Laboratoire de Microbiologie, Géochimie et Ecologie Marines | |
| 15:45 - 16:05 | › Detection of enzyme-labeled fluorescence phosphate (ELF-P) hydrolysis in the phytoplankton communities of North Pacific Subtropical Gyre - Mathias Girault, Tokyo University Marine Science and Technology, Dept. Ocean Sciences | |
| 16:05 - 16:35 | Coffee break | |
| 16:35 - 17:15 | New instrumental developments and techniques (Lectures) - J. Paul Robinson | |
| 16:35 - 16:55 | › Monitoring plasmid stability in agar plate cultures of recombinant protein producing Escherchia coli expressing using GFP-based flow cytometry. - Christopher Wyre, School of Chemical Engineering, University of Birmingham | |
| 16:55 - 17:15 | › Single-cell fingerprint dynamics of antibody fragment secreting Bacillus megaterium cells - Florian David, Institute of Biochemical Engineering, Technische Universität Braunschweig | |
| 17:15 - 18:00 | Closing Session (Lectures) - Jeff Cole & Gérald Grégori | |
| 18:00 - 20:00 | Free time | |
| 20:00 - 22:00 | Closing Gala |
Tuesday, November 8, 2011
| Time | Event | |
| 07:30 - 08:30 | Breakfast | |
| 08:30 - 10:00 | Departures - Departure of the participants |
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